ucsc-genome-browser-querier
// UCSC Genome Browser query skill for genome annotation retrieval and track data access
$ git log --oneline --stat
stars:384
forks:73
updated:March 4, 2026
SKILL.mdreadonly
SKILL.md Frontmatter
nameucsc-genome-browser-querier
descriptionUCSC Genome Browser query skill for genome annotation retrieval and track data access
allowed-toolsRead,Write,Glob,Grep,Edit,WebFetch,WebSearch,Bash
metadata[object Object]
UCSC Genome Browser Querier Skill
Purpose
Provide UCSC Genome Browser queries for genome annotation retrieval and track data access.
Capabilities
- Track data retrieval
- Custom track upload
- Genome annotation queries
- Conservation score extraction
- Table browser queries
- bigWig/bigBed handling
Usage Guidelines
- Query relevant annotation tracks
- Upload custom data for visualization
- Extract conservation scores for analysis
- Use Table Browser for data extraction
- Handle bigWig/bigBed formats efficiently
- Document genome assembly versions
Dependencies
- UCSC API
- kent utilities
- pyBigWig
Process Integration
- Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)
- RNA-seq Differential Expression Analysis (rnaseq-differential-expression)