singularity-container-manager
// Singularity container management skill for HPC-compatible containerized execution
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updated:March 4, 2026
SKILL.mdreadonly
SKILL.md Frontmatter
namesingularity-container-manager
descriptionSingularity container management skill for HPC-compatible containerized execution
allowed-toolsRead,Write,Glob,Grep,Edit,WebFetch,WebSearch,Bash
metadata[object Object]
Singularity Container Manager Skill
Purpose
Provide Singularity container management for HPC-compatible containerized execution.
Capabilities
- Container building from recipes
- Registry pull and caching
- Bind mount configuration
- GPU passthrough
- MPI integration
- Security compliance for HPC
Usage Guidelines
- Build containers from definition files
- Cache containers for repeated use
- Configure bind mounts appropriately
- Enable GPU for accelerated workloads
- Integrate with MPI for parallel computing
- Ensure HPC security compliance
Dependencies
- Singularity/Apptainer
- Docker
- BioContainers
Process Integration
- Reproducible Research Workflow (reproducible-research)
- All analysis pipelines