qiime2-microbiome-analyzer
// QIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis
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updated:March 4, 2026
SKILL.mdreadonly
SKILL.md Frontmatter
nameqiime2-microbiome-analyzer
descriptionQIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis
allowed-toolsRead,Write,Glob,Grep,Edit,WebFetch,WebSearch,Bash
metadata[object Object]
QIIME2 Microbiome Analyzer Skill
Purpose
Enable QIIME2 microbiome analysis for 16S rRNA profiling and diversity analysis.
Capabilities
- Demultiplexing and denoising (DADA2)
- Taxonomic classification
- Alpha diversity metrics
- Beta diversity analysis
- Differential abundance testing
- Phylogenetic analysis
Usage Guidelines
- Use DADA2 for denoising amplicon data
- Select appropriate taxonomic classifier
- Calculate diversity metrics with rarefaction
- Visualize beta diversity with ordination
- Test differential abundance appropriately
- Document pipeline parameters
Dependencies
- QIIME2
- DADA2
- phyloseq
Process Integration
- 16S rRNA Microbiome Analysis (16s-microbiome-analysis)