pymol-visualizer
// PyMOL molecular visualization skill for structure rendering and analysis
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stars:384
forks:73
updated:March 4, 2026
SKILL.mdreadonly
SKILL.md Frontmatter
namepymol-visualizer
descriptionPyMOL molecular visualization skill for structure rendering and analysis
allowed-toolsRead,Write,Glob,Grep,Edit,WebFetch,WebSearch,Bash
metadata[object Object]
PyMOL Visualizer Skill
Purpose
Enable PyMOL molecular visualization for structure rendering and analysis.
Capabilities
- Protein structure visualization
- Surface representation
- Binding site highlighting
- Movie and animation generation
- Publication-quality images
- Scripted visualization pipelines
Usage Guidelines
- Select appropriate representation styles
- Highlight functionally important regions
- Generate consistent visualizations
- Create animations for presentations
- Export high-resolution images
- Document visualization parameters
Dependencies
- PyMOL
- ChimeraX
- VMD
- NGLview
Process Integration
- Protein Structure Prediction (protein-structure-prediction)
- Molecular Docking and Virtual Screening (molecular-docking)