pubmed-literature-miner
// Biomedical literature mining using PubMed/MEDLINE for systematic review support
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updated:March 4, 2026
SKILL.mdreadonly
SKILL.md Frontmatter
namepubmed-literature-miner
descriptionBiomedical literature mining using PubMed/MEDLINE for systematic review support
allowed-toolsBash,Read,Write,Edit,Glob,Grep,WebFetch
metadata[object Object]
PubMed Literature Miner
Purpose
Provides biomedical literature mining capabilities using PubMed/MEDLINE for systematic review support and PICO framework analysis.
Capabilities
- MeSH term-based search
- PICO element extraction
- Abstract screening automation
- Citation deduplication
- PRISMA flow diagram data generation
- Full-text retrieval coordination
Usage Guidelines
- MeSH Terms: Use controlled vocabulary for precise searches
- PICO Framework: Structure searches around population, intervention, comparison, outcome
- Screening: Apply inclusion/exclusion criteria systematically
- PRISMA Compliance: Generate required flow diagram data
Tools/Libraries
- Biopython
- PyMed
- NCBI E-utilities