pharmgkb-annotator
// PharmGKB pharmacogenomics annotation skill for drug-gene interaction assessment
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updated:March 4, 2026
SKILL.mdreadonly
SKILL.md Frontmatter
namepharmgkb-annotator
descriptionPharmGKB pharmacogenomics annotation skill for drug-gene interaction assessment
allowed-toolsRead,Write,Glob,Grep,Edit,WebFetch,WebSearch,Bash
metadata[object Object]
PharmGKB Annotator Skill
Purpose
Provide PharmGKB pharmacogenomics annotation for drug-gene interaction assessment.
Capabilities
- Star allele calling (Stargazer)
- Diplotype determination
- CPIC guideline integration
- Drug recommendation generation
- Clinical annotation lookup
- Dosing guidance extraction
Usage Guidelines
- Call star alleles accurately
- Determine diplotypes from genotypes
- Apply CPIC guidelines for dosing
- Generate actionable recommendations
- Review clinical annotations
- Document guideline versions
Dependencies
- PharmGKB API
- Stargazer
- PharmCAT
Process Integration
- Pharmacogenomics Analysis (pharmacogenomics-analysis)
- Clinical Variant Interpretation (clinical-variant-interpretation)