humann-functional-profiler
// HUMAnN functional profiling skill for metagenomic pathway analysis
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updated:March 4, 2026
SKILL.mdreadonly
SKILL.md Frontmatter
namehumann-functional-profiler
descriptionHUMAnN functional profiling skill for metagenomic pathway analysis
allowed-toolsRead,Write,Glob,Grep,Edit,WebFetch,WebSearch,Bash
metadata[object Object]
HUMAnN Functional Profiler Skill
Purpose
Provide HUMAnN functional profiling for metagenomic pathway analysis.
Capabilities
- Gene family quantification
- MetaCyc pathway abundance
- UniRef annotation
- Stratified functional profiles
- Pathway coverage analysis
- Custom database integration
Usage Guidelines
- Run taxonomic profiling first
- Quantify gene families and pathways
- Stratify by organism when relevant
- Analyze pathway coverage
- Compare functional profiles
- Document database versions
Dependencies
- HUMAnN3
- eggNOG-mapper
- Prokka
Process Integration
- Shotgun Metagenomics Pipeline (shotgun-metagenomics)